Gadolinium in PDB 8ch0: Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium.

The structure of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium., PDB code: 8ch0 was solved by M.Liutkus, A.L.Rojas, A.L.Cortajarena, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.03 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.228, 57.73, 76.289, 90, 90, 90
R / Rfree (%)	17.9 / 21

The binding sites of Gadolinium atom in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium. (pdb code 8ch0). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 3 binding sites of Gadolinium where determined in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium., PDB code: 8ch0:
Jump to Gadolinium binding site number: 1; 2; 3;

Gadolinium binding site 1 out of 3 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium.


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium. within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd201 b:51.7 occ:0.50 O A:HOH334 2.2 57.9 1.0 O A:HOH320 2.3 59.8 1.0 O A:HOH335 2.3 56.7 1.0 OD2 A:ASP18 2.5 68.7 1.0 OE1 A:GLU19 2.5 50.9 1.0 OE2 A:GLU19 2.6 61.6 1.0 OD1 A:ASP18 2.6 57.8 1.0 CG A:ASP18 2.9 56.4 1.0 CD A:GLU19 2.9 53.1 1.0 O A:HOH317 4.3 58.4 1.0 CB A:ASP18 4.4 44.2 1.0 CG A:GLU19 4.4 43.6 1.0 OD1 A:ASP16 4.6 45.9 1.0 N A:GLU19 4.8 33.5 1.0 CB A:ASP16 4.9 33.9 1.0 CG A:ASP16 5.0 44.4 1.0

Gadolinium binding site 2 out of 3 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium.


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium. within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd202 b:27.7 occ:1.00 O A:HOH326 2.4 29.2 1.0 OD1 A:ASP50 2.5 27.3 1.0 OD2 A:ASP50 2.6 27.6 1.0 CG A:ASP50 2.8 29.1 1.0 CB A:ASP50 4.4 27.0 1.0 NE2 A:GLN48 4.6 35.5 1.0 CG A:GLN48 4.6 52.7 1.0 O A:GLN48 4.6 34.0 1.0 O A:HOH307 4.7 25.2 1.0 O A:HOH318 4.9 39.1 1.0 CD A:GLN48 5.0 51.7 1.0

Gadolinium binding site 3 out of 3 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium.


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 3 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium. within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd203 b:28.2 occ:1.00 O A:HOH333 2.4 32.6 1.0 O A:HOH307 2.4 25.2 1.0 OE2 A:GLU53 2.4 28.8 1.0 OD2 A:ASP52 2.5 26.9 1.0 OE1 A:GLU53 2.5 30.6 1.0 OD1 A:ASP52 2.6 31.6 1.0 CD A:GLU53 2.8 32.4 1.0 CG A:ASP52 2.9 28.8 1.0 CG A:GLU53 4.3 28.6 1.0 CB A:ASP52 4.4 30.1 1.0 N A:TRS204 4.4 35.3 1.0 OD1 A:ASP50 4.5 27.3 1.0 O A:HOH328 4.5 36.1 1.0 O2 A:TRS204 4.6 37.8 1.0 O A:HOH329 4.6 46.9 1.0 O A:HOH345 4.7 48.3 1.0 N A:GLU53 4.7 28.0 1.0 CB A:ASP50 4.9 27.0 1.0

M.Liutkus, A.L.Rojas, A.L.Cortajarena. Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Gadolinium. To Be Published.