Gadolinium in PDB 7ph3: Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C

All present enzymatic activity of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C:
7.5.2.6;

The structure of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Gadolinium atom in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C (pdb code 7ph3). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C, PDB code: 7ph3:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C within 5.0Å range: probe atom residue distance (Å) B Occ C:Gd201 b:163.9 occ:1.00 C15 C:88T200 2.2 109.4 0.1 O6 C:88T200 2.2 109.4 0.1 O8 C:88T200 2.3 109.4 0.1 O4 C:88T200 2.3 109.4 0.1 O9 C:88T200 2.3 109.4 0.1 N5 C:88T200 2.6 109.4 0.1 N7 C:88T200 2.6 109.4 0.1 C21 C:88T200 2.6 109.4 0.1 N4 C:88T200 2.6 109.4 0.1 O5 C:88T200 2.6 109.4 0.1 N6 C:88T200 2.7 109.4 0.1 C14 C:88T200 3.0 109.4 0.1 C10 C:88T200 3.0 109.4 0.1 C25 C:88T200 3.0 109.4 0.1 C20 C:88T200 3.2 109.4 0.1 C24 C:88T200 3.4 109.4 0.1 O7 C:88T200 3.4 109.4 0.1 C11 C:88T200 3.4 109.4 0.1 C18 C:88T200 3.4 109.4 0.1 C12 C:88T200 3.4 109.4 0.1 C19 C:88T200 3.5 109.4 0.1 C13 C:88T200 3.5 109.4 0.1 C23 C:88T200 3.5 109.4 0.1 C22 C:88T200 3.6 109.4 0.1 C16 C:88T200 3.6 109.4 0.1 C17 C:88T200 3.6 109.4 0.1 O10 C:88T200 4.1 109.4 0.1 O2 C:88T200 4.1 109.4 0.1 N3 C:88T200 4.2 109.4 0.1 C8 C:88T200 4.5 109.4 0.1 C9 C:88T200 4.7 109.4 0.1

Gadolinium binding site 2 out of 2 in the Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Amp-Pnp Bound Nanodisc Reconstituted Msba with Nanobodies, Spin- Labeled at Position A60C within 5.0Å range: probe atom residue distance (Å) B Occ D:Gd201 b:174.8 occ:1.00 O8 D:88T200 2.2 115.7 0.1 O9 D:88T200 2.2 115.7 0.1 O6 D:88T200 2.2 115.7 0.1 O4 D:88T200 2.2 115.7 0.1 C15 D:88T200 2.3 115.7 0.1 C21 D:88T200 2.6 115.7 0.1 N7 D:88T200 2.6 115.7 0.1 N5 D:88T200 2.7 115.7 0.1 N6 D:88T200 2.7 115.7 0.1 O5 D:88T200 2.7 115.7 0.1 N4 D:88T200 2.7 115.7 0.1 C14 D:88T200 3.0 115.7 0.1 C10 D:88T200 3.0 115.7 0.1 C25 D:88T200 3.0 115.7 0.1 C20 D:88T200 3.2 115.7 0.1 O7 D:88T200 3.3 115.7 0.1 C24 D:88T200 3.3 115.7 0.1 C18 D:88T200 3.4 115.7 0.1 C11 D:88T200 3.4 115.7 0.1 C19 D:88T200 3.5 115.7 0.1 C12 D:88T200 3.5 115.7 0.1 C23 D:88T200 3.6 115.7 0.1 C13 D:88T200 3.6 115.7 0.1 C22 D:88T200 3.6 115.7 0.1 C16 D:88T200 3.6 115.7 0.1 C17 D:88T200 3.6 115.7 0.1 O10 D:88T200 4.1 115.7 0.1 O2 D:88T200 4.1 115.7 0.1 N3 D:88T200 4.2 115.7 0.1 C8 D:88T200 4.5 115.7 0.1 C9 D:88T200 4.7 115.7 0.1 C5 D:88T200 5.0 115.7 0.1

L.Galazzo, G.Meier, D.Januliene, K.Parey, D.De Vecchis, B.Striednig, H.Hilbi, L.V.Schafer, I.Kuprov, A.Moeller, E.Bordignon, M.A.Seeger. The Abc Transporter Msba Adopts the Wide Inward-Open Conformation in E. Coli Cells. Sci Adv V. 8 N6845 2022.
ISSN: ESSN 2375-2548
PubMed: 36223470
DOI: 10.1126/SCIADV.ABN6845