Gadolinium in PDB 5woa: Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium

The structure of Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium, PDB code: 5woa was solved by A.K.Singh, K.Saotome, A.I.Sobolevsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.18 / 3.90
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	146.077, 146.077, 116.007, 90.00, 90.00, 90.00
R / Rfree (%)	27.1 / 31.6

The binding sites of Gadolinium atom in the Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium (pdb code 5woa). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium, PDB code: 5woa:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in the Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd701 b:0.0 occ:1.01 O A:ASP517 4.6 0.3 1.0

Gadolinium binding site 2 out of 2 in the Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Crystal Structure of Transient Receptor Potential (Trp) Channel TRPV6* in the Presence of Gadolinium within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd702 b:30.0 occ:0.25 OD1 A:ASP541 3.0 77.6 1.0 CG A:ASP541 3.1 0.7 1.0 OD2 A:ASP541 3.5 89.6 1.0 CB A:ASP541 3.6 0.6 1.0 CA A:ASP541 4.3 0.9 1.0 N A:ASP541 4.6 0.9 1.0

A.K.Singh, K.Saotome, A.I.Sobolevsky. Swapping of Transmembrane Domains in the Epithelial Calcium Channel TRPV6. Sci Rep V. 7 10669 2017.
ISSN: ESSN 2045-2322
PubMed: 28878326
DOI: 10.1038/S41598-017-10993-9