Gadolinium in PDB 5n35: Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang

The structure of Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang, PDB code: 5n35 was solved by J.Yan, T.R.Beattie, A.L.Rojas, K.Schermerhorn, T.Gristwood, J.C.Trinidad, S.V.Albers, P.Roversi, A.F.Gardner, N.G.A.Abrescia, S.D.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.08 / 2.24
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	62.150, 62.150, 35.680, 90.00, 90.00, 120.00
R / Rfree (%)	22.7 / 27.5

The binding sites of Gadolinium atom in the Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang (pdb code 5n35). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang, PDB code: 5n35:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in the Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd100 b:53.0 occ:0.18 OE1 A:GLU60 2.3 75.1 1.0 CD A:GLU60 3.5 73.8 1.0 GD A:GD101 4.1 82.7 0.2 OE2 A:GLU60 4.1 69.5 1.0 CG A:GLU60 4.6 45.9 1.0

Gadolinium binding site 2 out of 2 in the Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Gadolinium Phased PBP2 (SSO6202) at 2.2 Ang within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd101 b:82.7 occ:0.22 O A:LYS61 2.6 37.9 1.0 C A:LYS61 3.2 37.1 1.0 N A:GLY62 3.6 32.8 1.0 CA A:GLY62 3.8 31.4 1.0 OE1 A:GLU60 3.8 75.1 1.0 N A:LYS61 3.9 31.5 1.0 CB A:GLU60 3.9 31.9 1.0 GD A:GD100 4.1 53.0 0.2 CA A:LYS61 4.2 31.6 1.0 O A:HOH219 4.2 41.3 1.0 C A:GLU60 4.3 34.3 1.0 CG A:GLU60 4.6 45.9 1.0 CD A:GLU60 4.6 73.8 1.0 CA A:GLU60 4.7 30.4 1.0 O A:HOH218 4.8 42.8 1.0 O A:GLU60 4.8 32.8 1.0 OD1 A:ASN67 5.0 35.3 1.0

J.Yan, T.R.Beattie, A.L.Rojas, K.Schermerhorn, T.Gristwood, J.C.Trinidad, S.V.Albers, P.Roversi, A.F.Gardner, N.G.A.Abrescia, S.D.Bell. Identification and Characterization of A Heterotrimeric Archaeal Dna Polymerase Holoenzyme. Nat Commun V. 8 15075 2017.
ISSN: ESSN 2041-1723
PubMed: 28462924
DOI: 10.1038/NCOMMS15075