Gadolinium in PDB 5iwt: Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium

The structure of Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium, PDB code: 5iwt was solved by K.Saotome, A.K.Singh, M.V.Yelshanskaya, A.I.Sobolevsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.56 / 3.80
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	144.350, 144.350, 113.370, 90.00, 90.00, 90.00
R / Rfree (%)	27.5 / 30.7

The binding sites of Gadolinium atom in the Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium (pdb code 5iwt). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium, PDB code: 5iwt:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in the Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd701 b:0.6 occ:0.25 OD1 A:ASP541 2.6 0.1 1.0 CG A:ASP541 3.3 0.5 1.0 CB A:ASP541 3.7 0.0 1.0 OD2 A:ASP541 4.1 0.1 1.0 CA A:ASP541 4.4 1.0 1.0 N A:ASP541 4.8 0.9 1.0

Gadolinium binding site 2 out of 2 in the Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Structure of Transient Receptor Potential (Trp) Channel TRPV6 in the Presence of Gadolinium within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd702 b:0.1 occ:1.00 OE2 A:GLU518 4.0 0.0 1.0 CG A:GLU518 4.5 0.8 1.0 CD A:GLU518 4.7 0.3 1.0 O A:ASP517 4.9 0.8 1.0

K.Saotome, A.K.Singh, M.V.Yelshanskaya, A.I.Sobolevsky. Crystal Structure of the Epithelial Calcium Channel TRPV6. Nature V. 534 506 2016.
ISSN: ESSN 1476-4687
PubMed: 27296226
DOI: 10.1038/NATURE17975