Gadolinium in PDB 4l12: Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd

The structure of Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd, PDB code: 4l12 was solved by Y.Zhang, I.T.Weber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.13 / 1.78
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	61.062, 88.334, 118.167, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 22

The binding sites of Gadolinium atom in the Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd (pdb code 4l12). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd, PDB code: 4l12:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in the Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd501 b:38.0 occ:0.70 O A:HOH726 2.1 33.9 1.0 OE2 A:GLU147 2.2 30.5 1.0 OD2 A:ASP202 2.5 24.4 1.0 OD1 A:ASP202 2.6 22.5 1.0 OE1 A:GLU204 2.7 32.7 1.0 CG A:ASP202 2.9 20.6 1.0 CD A:GLU147 3.0 28.5 1.0 OE1 A:GLU147 3.4 27.8 1.0 CD A:GLU204 3.6 25.7 1.0 GD A:GD502 3.6 37.1 0.3 CG A:GLU204 4.1 24.6 1.0 O A:HOH727 4.1 24.7 1.0 CG A:GLU147 4.2 24.1 1.0 CB A:ASP202 4.4 17.3 1.0 OE2 A:GLU204 4.5 29.5 1.0 O A:HOH674 5.0 33.6 1.0

Gadolinium binding site 2 out of 2 in the Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Crystal Structure of Egfp-Based Calcium Sensor Catcher Complexed with Gd within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd502 b:37.1 occ:0.30 O A:HOH727 2.2 24.7 1.0 O A:HOH674 2.9 33.6 1.0 OE2 A:GLU204 2.9 29.5 1.0 OE1 A:GLU204 3.2 32.7 1.0 CD A:GLU204 3.2 25.7 1.0 GD A:GD501 3.6 38.0 0.7 OE2 A:GLU223 3.8 32.4 1.0 OE2 A:GLU225 3.9 33.4 1.0 CD A:GLU225 3.9 26.3 1.0 CD A:GLU223 4.0 26.8 1.0 CG A:GLU225 4.2 23.8 1.0 OD1 A:ASP202 4.3 22.5 1.0 CG A:GLU204 4.3 24.6 1.0 OE1 A:GLU225 4.3 35.3 1.0 OE1 A:GLU223 4.5 33.0 1.0 CG A:GLU223 4.5 25.5 1.0 CG A:ASP202 4.5 20.6 1.0 OD2 A:ASP202 4.7 24.4 1.0 O A:GLU223 4.8 18.7 1.0 O A:HOH726 4.8 33.9 1.0 O A:ASP202 4.9 15.8 1.0

Y.Zhang, F.Reddish, S.Tang, Y.Zhuo, Y.F.Wang, J.J.Yang, I.T.Weber. Structural Basis For A Hand-Like Site in the Calcium Sensor Catcher with Fast Kinetics. Acta Crystallogr.,Sect.D V. 69 2309 2013.
ISSN: ISSN 0907-4449
PubMed: 24311573
DOI: 10.1107/S0907444913021306