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Gadolinium in PDB 2p80: Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis

Enzymatic activity of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis

All present enzymatic activity of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis:
1.7.2.1;

Other elements in 2p80:

The structure of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis also contains other interesting chemical elements:

Copper (Cu) 140 atoms

Gadolinium Binding Sites:

The binding sites of Gadolinium atom in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis (pdb code 2p80). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 9 binding sites of Gadolinium where determined in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis, PDB code: 2p80:
Jump to Gadolinium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Gadolinium binding site 1 out of 9 in 2p80

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Gadolinium binding site 1 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Gd347

b:0.0
occ:1.00
HZ3 A:LYS231 2.4 0.0 1.0
HZ1 A:LYS231 2.6 0.0 1.0
NZ A:LYS231 2.9 16.0 1.0
HZ2 A:LYS231 3.4 0.0 1.0
HD3 A:LYS231 3.7 0.0 1.0
CE A:LYS231 4.1 17.3 1.0
HE2 A:LYS231 4.4 0.0 1.0
CD A:LYS231 4.4 15.7 1.0
HD2 A:LYS231 4.8 0.0 1.0
HE3 A:LYS231 5.0 0.0 1.0

Gadolinium binding site 2 out of 9 in 2p80

Go back to Gadolinium Binding Sites List in 2p80
Gadolinium binding site 2 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Gd348

b:0.0
occ:1.00
HG1 A:THR234 4.4 0.0 1.0
HG23 A:THR234 4.9 0.0 1.0
OG1 A:THR234 4.9 12.9 1.0

Gadolinium binding site 3 out of 9 in 2p80

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Gadolinium binding site 3 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 3 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:

Gadolinium binding site 4 out of 9 in 2p80

Go back to Gadolinium Binding Sites List in 2p80
Gadolinium binding site 4 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 4 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Gd347

b:0.0
occ:1.00
HZ1 B:LYS231 3.7 0.0 1.0
HZ3 B:LYS231 4.3 0.0 1.0
NZ B:LYS231 4.4 27.6 1.0
HZ2 B:LYS231 4.7 0.0 1.0

Gadolinium binding site 5 out of 9 in 2p80

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Gadolinium binding site 5 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 5 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:

Gadolinium binding site 6 out of 9 in 2p80

Go back to Gadolinium Binding Sites List in 2p80
Gadolinium binding site 6 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 6 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:

Gadolinium binding site 7 out of 9 in 2p80

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Gadolinium binding site 7 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 7 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Gd347

b:0.0
occ:1.00
HZ1 C:LYS231 2.9 0.0 1.0
HZ2 C:LYS231 3.3 0.0 1.0
NZ C:LYS231 3.5 27.8 1.0
HE3 C:LYS231 3.8 0.0 1.0
CE C:LYS231 4.3 23.5 1.0
HZ3 C:LYS231 4.4 0.0 1.0
HD2 C:LYS231 5.0 0.0 1.0

Gadolinium binding site 8 out of 9 in 2p80

Go back to Gadolinium Binding Sites List in 2p80
Gadolinium binding site 8 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 8 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Gd348

b:0.0
occ:1.00
HZ1 C:LYS174 4.7 0.0 1.0
HG1 C:THR234 4.8 0.0 1.0
OG1 C:THR234 5.0 18.4 1.0

Gadolinium binding site 9 out of 9 in 2p80

Go back to Gadolinium Binding Sites List in 2p80
Gadolinium binding site 9 out of 9 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 9 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range:

Reference:

M.D.Vlasie, R.Fernandez-Busnadiego, M.Prudencio, M.Ubbink. Low Resolution Solution Structure of the 152 kDa Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis By Paramagnetic uc(Nmr). To Be Published.
Page generated: Fri Aug 8 08:26:53 2025

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