Gadolinium in PDB 7ph7: Nanodisc Reconstituted Msba in Complex with Nanobodies, Spin-Labeled at Position T68C

The binding sites of Gadolinium atom in the Nanodisc Reconstituted Msba in Complex with Nanobodies, Spin-Labeled at Position T68C (pdb code 7ph7). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Nanodisc Reconstituted Msba in Complex with Nanobodies, Spin-Labeled at Position T68C, PDB code: 7ph7:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in the Nanodisc Reconstituted Msba in Complex with Nanobodies, Spin-Labeled at Position T68C


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Nanodisc Reconstituted Msba in Complex with Nanobodies, Spin-Labeled at Position T68C within 5.0Å range: probe atom residue distance (Å) B Occ C:Gd201 b:335.9 occ:1.00 O8 C:88T200 2.3 298.1 0.1 O6 C:88T200 2.3 298.1 0.1 O9 C:88T200 2.3 298.1 0.1 O4 C:88T200 2.3 298.1 0.1 C25 C:88T200 2.5 298.1 0.1 N7 C:88T200 2.6 298.1 0.1 N6 C:88T200 2.6 298.1 0.1 N5 C:88T200 2.6 298.1 0.1 N4 C:88T200 2.7 298.1 0.1 O10 C:88T200 2.9 298.1 0.1 C21 C:88T200 2.9 298.1 0.1 C15 C:88T200 2.9 298.1 0.1 C10 C:88T200 3.0 298.1 0.1 C24 C:88T200 3.2 298.1 0.1 C20 C:88T200 3.3 298.1 0.1 C14 C:88T200 3.4 298.1 0.1 C16 C:88T200 3.4 298.1 0.1 C23 C:88T200 3.4 298.1 0.1 C11 C:88T200 3.4 298.1 0.1 C19 C:88T200 3.5 298.1 0.1 C17 C:88T200 3.5 298.1 0.1 C18 C:88T200 3.5 298.1 0.1 C13 C:88T200 3.5 298.1 0.1 C22 C:88T200 3.5 298.1 0.1 C12 C:88T200 3.6 298.1 0.1 O5 C:88T200 3.9 298.1 0.1 O7 C:88T200 3.9 298.1 0.1 N3 C:88T200 4.1 298.1 0.1 C8 C:88T200 4.1 298.1 0.1 C9 C:88T200 4.6 298.1 0.1 N2 C:88T200 5.0 298.1 0.1

Gadolinium binding site 2 out of 2 in the Nanodisc Reconstituted Msba in Complex with Nanobodies, Spin-Labeled at Position T68C


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Nanodisc Reconstituted Msba in Complex with Nanobodies, Spin-Labeled at Position T68C within 5.0Å range: probe atom residue distance (Å) B Occ D:Gd201 b:335.6 occ:1.00 O8 D:88T200 2.3 290.7 0.1 O4 D:88T200 2.3 290.7 0.1 C10 D:88T200 2.5 290.7 0.1 N5 D:88T200 2.6 290.7 0.1 N4 D:88T200 2.6 290.7 0.1 N7 D:88T200 2.6 290.7 0.1 N6 D:88T200 2.7 290.7 0.1 C21 D:88T200 2.7 290.7 0.1 O9 D:88T200 2.7 290.7 0.1 O6 D:88T200 2.7 290.7 0.1 C11 D:88T200 3.1 290.7 0.1 C15 D:88T200 3.2 290.7 0.1 N3 D:88T200 3.2 290.7 0.1 C20 D:88T200 3.2 290.7 0.1 C25 D:88T200 3.3 290.7 0.1 C16 D:88T200 3.3 290.7 0.1 C17 D:88T200 3.4 290.7 0.1 C13 D:88T200 3.4 290.7 0.1 C19 D:88T200 3.4 290.7 0.1 C18 D:88T200 3.4 290.7 0.1 C12 D:88T200 3.4 290.7 0.1 O7 D:88T200 3.5 290.7 0.1 C14 D:88T200 3.5 290.7 0.1 C24 D:88T200 3.5 290.7 0.1 C23 D:88T200 3.6 290.7 0.1 C22 D:88T200 3.6 290.7 0.1 C9 D:88T200 3.7 290.7 0.1 O5 D:88T200 4.0 290.7 0.1 O10 D:88T200 4.2 290.7 0.1

L.Galazzo, G.Meier, D.Januliene, K.Parey, D.De Vecchis, B.Striednig, H.Hilbi, L.V.Schafer, I.Kuprov, A.Moeller, E.Bordignon, M.A.Seeger. The Abc Transporter Msba Adopts the Wide Inward-Open Conformation in E. Coli Cells. Sci Adv V. 8 N6845 2022.
ISSN: ESSN 2375-2548
PubMed: 36223470
DOI: 10.1126/SCIADV.ABN6845