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Gadolinium in PDB 2hhm: Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy

Enzymatic activity of Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy

All present enzymatic activity of Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy:
3.1.3.25;

Protein crystallography data

The structure of Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy, PDB code: 2hhm was solved by R.Bone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.10
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.200, 86.200, 154.300, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Gadolinium Binding Sites:

The binding sites of Gadolinium atom in the Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy (pdb code 2hhm). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy, PDB code: 2hhm:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in 2hhm

Go back to Gadolinium Binding Sites List in 2hhm
Gadolinium binding site 1 out of 2 in the Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Gd1

b:24.4
occ:1.00
OD1 A:ASP90 2.3 19.4 1.0
OE1 A:GLU70 2.4 23.4 1.0
O A:ILE92 2.6 18.3 1.0
O2 A:SO4278 2.6 16.3 1.0
O A:HOH279 2.6 26.9 1.0
O A:HOH280 2.6 19.6 1.0
O3 A:SO4278 2.7 17.1 1.0
OG1 A:THR95 2.7 17.5 1.0
OD2 A:ASP90 3.0 19.5 1.0
CG A:ASP90 3.0 19.8 1.0
S A:SO4278 3.2 15.1 1.0
CD A:GLU70 3.4 22.9 1.0
C A:ILE92 3.6 17.2 1.0
OE2 A:GLU70 3.7 22.6 1.0
CB A:THR95 3.9 14.5 1.0
O1 A:SO4278 4.0 17.3 1.0
OD2 A:ASP47 4.1 21.2 1.0
O4 A:SO4278 4.2 16.4 1.0
N A:ASP93 4.3 16.9 1.0
CA A:ASP93 4.3 16.8 1.0
O A:HOH341 4.3 31.5 1.0
N A:THR95 4.4 14.0 1.0
CB A:ASP90 4.5 18.9 1.0
N A:ILE92 4.5 18.2 1.0
CA A:ILE92 4.5 17.3 1.0
OE2 A:GLU71 4.6 24.3 1.0
CG A:GLU70 4.7 22.4 1.0
CA A:THR95 4.7 15.3 1.0
N A:GLY94 4.7 15.0 1.0
CB A:ILE92 4.8 17.7 1.0
O A:HOH336 4.9 27.4 1.0
C A:ASP93 4.9 16.1 1.0
CG2 A:THR95 5.0 16.4 1.0
CB A:GLU70 5.0 21.9 1.0

Gadolinium binding site 2 out of 2 in 2hhm

Go back to Gadolinium Binding Sites List in 2hhm
Gadolinium binding site 2 out of 2 in the Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Gd1

b:22.9
occ:1.00
O B:ILE92 2.3 17.3 1.0
OD1 B:ASP90 2.4 17.1 1.0
OE1 B:GLU70 2.6 19.3 1.0
O2 B:SO4278 2.6 16.5 1.0
O B:HOH279 2.6 16.7 1.0
O B:HOH280 2.6 17.6 1.0
O1 B:SO4278 2.9 18.0 1.0
OG1 B:THR95 2.9 15.9 1.0
OD2 B:ASP90 2.9 18.6 1.0
CG B:ASP90 3.1 16.8 1.0
S B:SO4278 3.2 16.7 1.0
CD B:GLU70 3.4 18.0 1.0
C B:ILE92 3.5 16.4 1.0
OE2 B:GLU70 3.6 17.5 1.0
CB B:THR95 3.9 15.2 1.0
O4 B:SO4278 4.1 18.3 1.0
OD2 B:ASP47 4.2 19.2 1.0
CA B:ASP93 4.2 14.8 1.0
N B:ASP93 4.3 15.3 1.0
O3 B:SO4278 4.3 16.4 1.0
N B:THR95 4.3 15.7 1.0
O B:HOH290 4.3 30.9 1.0
CA B:ILE92 4.4 17.0 1.0
N B:ILE92 4.4 16.3 1.0
OE2 B:GLU71 4.5 21.9 1.0
CB B:ASP90 4.5 17.5 1.0
N B:GLY94 4.6 15.4 1.0
CA B:THR95 4.7 15.5 1.0
CG B:GLU70 4.7 18.6 1.0
CB B:ILE92 4.8 17.9 1.0
C B:ASP93 4.9 15.1 1.0
O B:HOH302 4.9 19.9 1.0

Reference:

R.Bone, J.P.Springer, J.R.Atack. Structure of Inositol Monophosphatase, the Putative Target of Lithium Therapy. Proc.Natl.Acad.Sci.Usa V. 89 10031 1992.
ISSN: ISSN 0027-8424
PubMed: 1332026
DOI: 10.1073/PNAS.89.21.10031
Page generated: Sun Dec 13 18:59:18 2020

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