Gadolinium in PDB 6rq7: Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data

The structure of Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data, PDB code: 6rq7 was solved by B.Rupp, M.W.Bowler, A.Naschberger, P.Juyoux, J.Vonvelsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	75.24 / 2.69
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.352, 109.734, 48.381, 90.00, 90.00, 90.00
R / Rfree (%)	26.3 / 33.5

The binding sites of Gadolinium atom in the Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data (pdb code 6rq7). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 3 binding sites of Gadolinium where determined in the Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data, PDB code: 6rq7:
Jump to Gadolinium binding site number: 1; 2; 3;

Gadolinium binding site 1 out of 3 in the Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data within 5.0Å range: probe atom residue distance (Å) B Occ B:Gd801 b:0.4 occ:0.73 N3 B:DO3808 2.6 0.3 0.0 O7 B:DO3808 2.7 0.0 0.0 O5 B:DO3808 2.7 0.4 0.0 N4 B:DO3808 2.7 0.8 0.0 O3 B:DO3808 2.7 0.9 0.0 N2 B:DO3808 2.7 0.9 0.0 O1 B:DO3808 2.8 1.0 0.0 N1 B:DO3808 2.8 0.2 0.0 C9 B:DO3808 3.1 0.2 0.0 C5 B:DO3808 3.1 0.7 0.0 C12 B:DO3808 3.1 0.7 0.0 C6 B:DO3808 3.2 0.7 0.0 C11 B:DO3808 3.3 0.6 0.0 C13 B:DO3808 3.3 0.6 0.0 C14 B:DO3808 3.4 0.7 0.0 C8 B:DO3808 3.4 0.1 0.0 C10 B:DO3808 3.4 0.3 0.0 C7 B:DO3808 3.5 0.9 0.0 C4 B:DO3808 3.5 0.2 0.0 C3 B:DO3808 3.5 0.6 0.0 C16 B:DO3808 3.6 0.6 0.0 C1 B:DO3808 3.6 0.8 0.0 C2 B:DO3808 3.6 0.4 0.0 C15 B:DO3808 3.7 0.7 0.0 O2 B:DO3808 3.8 0.2 0.0 O6 B:DO3808 4.4 1.0 0.0 O4 B:DO3808 4.6 0.3 0.0 O1 B:DO3809 4.7 99.1 0.0 C17 B:DO3808 4.8 0.3 0.0 O2 B:DO3809 4.8 96.5 0.0

Gadolinium binding site 2 out of 3 in the Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data within 5.0Å range: probe atom residue distance (Å) B Occ B:Gd802 b:0.7 occ:0.85 OE2 B:GLU64 5.0 95.8 1.0

Gadolinium binding site 3 out of 3 in the Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 3 of Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin - Resurrection of Highly Anisotropic Data within 5.0Å range: probe atom residue distance (Å) B Occ B:Gd803 b:97.4 occ:0.84 O7 B:DO3809 2.6 88.7 0.0 O3 B:DO3809 2.7 90.8 0.0 O1 B:DO3809 2.8 99.1 0.0 C17 B:DO3809 2.8 84.3 0.0 N2 B:DO3809 2.9 82.5 0.0 N4 B:DO3809 3.0 80.8 0.0 N1 B:DO3809 3.0 91.9 0.0 C15 B:DO3809 3.0 84.5 0.0 C2 B:DO3809 3.2 86.2 0.0 C1 B:DO3809 3.3 90.0 0.0 C16 B:DO3809 3.4 83.6 0.0 O6 B:DO3809 3.4 85.8 0.0 N3 B:DO3809 3.4 78.6 0.0 C11 B:DO3809 3.4 86.0 0.0 C12 B:DO3809 3.4 84.7 0.0 C9 B:DO3809 3.5 99.2 0.0 C13 B:DO3809 3.6 87.1 0.0 C10 B:DO3809 3.7 95.9 0.0 C6 B:DO3809 3.7 78.2 0.0 C7 B:DO3809 3.8 80.1 0.0 C8 B:DO3809 3.9 85.4 0.0 C3 B:DO3809 3.9 79.0 0.0 C5 B:DO3809 3.9 78.5 0.0 O5 B:DO3809 4.1 84.9 0.0 C14 B:DO3809 4.1 82.7 0.0 C4 B:DO3809 4.2 76.7 0.0 O3 B:DO3808 4.2 0.9 0.0 O4 B:DO3809 4.6 81.0 0.0 O2 B:DO3809 4.6 96.5 0.0 C11 B:DO3808 4.8 0.6 0.0 O6 B:DO3808 4.8 1.0 0.0 O4 B:DO3808 4.8 0.3 0.0

A.Naschberger, P.Juyoux, J.Von Velsen, M.Novokmet, B.Rupp, M.W.Bowler. Controlled Dehydration, Structural Flexibility, and Gadolinium Mri Contrast Compound Binding in Human Plasma Glycoprotein Afamin To Be Published.