Gadolinium in PDB 5c6i: Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation

All present enzymatic activity of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation:
3.2.1.17;

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation, PDB code: 5c6i was solved by L.Galli, T.R.M.Barends, S.-K.Son, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.44 / 1.90
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.200, 79.200, 39.400, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 22.2

The structure of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Gadolinium atom in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation (pdb code 5c6i). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total 2 binding sites of Gadolinium where determined in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation, PDB code: 5c6i:
Jump to Gadolinium binding site number: 1; 2;

Gadolinium binding site 1 out of 2 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd207 b:40.1 occ:1.00 O7 A:DO3201 2.2 41.5 1.0 O5 A:DO3201 2.3 52.0 1.0 O3 A:DO3201 2.5 39.3 1.0 O1 A:DO3201 2.5 52.3 1.0 O A:HOH302 2.5 32.5 1.0 N4 A:DO3201 2.6 45.1 1.0 C2 A:DO3201 2.9 47.6 1.0 C1 A:DO3201 3.1 47.9 1.0 C10 A:DO3201 3.3 50.4 1.0 C9 A:DO3201 3.3 51.9 1.0 N2 A:DO3201 3.3 46.3 1.0 C3 A:DO3201 3.3 47.6 1.0 C15 A:DO3201 3.3 42.9 1.0 C16 A:DO3201 3.4 44.4 1.0 N1 A:DO3201 3.4 48.6 1.0 C13 A:DO3201 3.4 52.1 1.0 C11 A:DO3201 3.4 44.7 1.0 C6 A:DO3201 3.4 47.7 1.0 C5 A:DO3201 3.4 48.5 1.0 C7 A:DO3201 3.5 46.2 1.0 C12 A:DO3201 3.6 44.9 1.0 N3 A:DO3201 3.7 49.9 1.0 C8 A:DO3201 3.7 47.0 1.0 C4 A:DO3201 3.8 48.5 1.0 C14 A:DO3201 4.0 49.9 1.0 O1 A:DO3202 4.3 42.8 1.0 O6 A:DO3201 4.4 51.2 1.0 C17 A:DO3201 4.4 43.1 1.0 O2 A:DO3201 4.5 53.8 1.0 O4 A:DO3201 4.6 44.9 1.0 O2 A:DO3202 4.7 44.4 1.0 C9 A:DO3202 4.9 47.3 1.0

Gadolinium binding site 2 out of 2 in the Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 2 of Crystal Structure of Gadolinium Derivative of Hewl Solved Using Free- Electron Laser Radiation within 5.0Å range: probe atom residue distance (Å) B Occ A:Gd208 b:46.0 occ:1.00 O5 A:DO3202 2.4 44.5 1.0 O7 A:DO3202 2.5 44.2 1.0 O3 A:DO3202 2.5 46.1 1.0 O1 A:DO3202 2.6 42.8 1.0 N4 A:DO3202 2.7 47.9 1.0 C4 A:DO3202 2.8 50.0 1.0 N3 A:DO3202 3.1 48.9 1.0 C12 A:DO3202 3.1 50.0 1.0 C13 A:DO3202 3.1 48.0 1.0 C11 A:DO3202 3.2 49.6 1.0 C14 A:DO3202 3.2 48.1 1.0 C5 A:DO3202 3.2 49.5 1.0 C10 A:DO3202 3.3 48.2 1.0 C3 A:DO3202 3.4 50.6 1.0 C9 A:DO3202 3.4 47.3 1.0 C6 A:DO3202 3.4 49.6 1.0 N2 A:DO3202 3.4 50.4 1.0 C8 A:DO3202 3.4 49.6 1.0 C7 A:DO3202 3.5 49.1 1.0 N1 A:DO3202 3.5 50.3 1.0 C16 A:DO3202 3.5 48.5 1.0 C15 A:DO3202 3.5 47.2 1.0 C2 A:DO3202 3.8 50.9 1.0 C1 A:DO3202 3.8 50.1 1.0 O6 A:DO3202 4.3 47.4 1.0 O A:HOH302 4.4 32.5 1.0 O3 A:DO3201 4.4 39.3 1.0 O4 A:DO3202 4.4 50.5 1.0 O4 A:DO3201 4.5 44.9 1.0 C17 A:DO3202 4.5 46.9 1.0 O2 A:DO3202 4.6 44.4 1.0 C11 A:DO3201 4.9 44.7 1.0

L.Galli, S.K.Son, T.R.Barends, T.A.White, A.Barty, S.Botha, S.Boutet, C.Caleman, R.B.Doak, M.H.Nanao, K.Nass, R.L.Shoeman, N.Timneanu, R.Santra, I.Schlichting, H.N.Chapman. Towards Phasing Using High X-Ray Intensity. Iucrj V. 2 627 2015.
ISSN: ESSN 2052-2525
PubMed: 26594370
DOI: 10.1107/S2052252515014049