Atomistry » Gadolinium » PDB 1b9x-4l12 » 1mqe
Atomistry »
  Gadolinium »
    PDB 1b9x-4l12 »
      1mqe »

Gadolinium in PDB 1mqe: Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme

Enzymatic activity of Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme

All present enzymatic activity of Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme:
3.6.1.13;

Protein crystallography data

The structure of Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme, PDB code: 1mqe was solved by L.-W.Kang, S.B.Gabelli, M.A.Bianchet, J.E.Cunningham, S.F.O'handley, L.M.Amzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 64.052, 64.052, 182.212, 90.00, 90.00, 120.00
R / Rfree (%) 20.5 / 26.6

Gadolinium Binding Sites:

The binding sites of Gadolinium atom in the Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme (pdb code 1mqe). This binding sites where shown within 5.0 Angstroms radius around Gadolinium atom.
In total only one binding site of Gadolinium was determined in the Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme, PDB code: 1mqe:

Gadolinium binding site 1 out of 1 in 1mqe

Go back to Gadolinium Binding Sites List in 1mqe
Gadolinium binding site 1 out of 1 in the Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme


Mono view


Stereo pair view

A full contact list of Gadolinium with other atoms in the Gd binding site number 1 of Structure of the Mt-Adprase in Complex with Gadolidium and Adp-Ribose, A Nudix Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Gd301

b:69.0
occ:0.50
O1A A:APR208 2.4 52.2 1.0
O A:HOH303 2.6 58.6 1.0
OE2 A:GLU93 2.6 51.7 1.0
O A:HOH302 2.9 58.1 1.0
PA A:APR208 3.6 44.5 1.0
CD A:GLU93 3.7 44.6 1.0
O2A A:APR208 4.0 44.1 1.0
OE1 A:GLU97 4.0 59.0 1.0
OE1 A:GLU93 4.1 44.7 1.0
OE2 A:GLU97 4.2 63.5 1.0
O A:HOH379 4.4 55.6 1.0
O5' A:APR208 4.4 48.1 1.0
O A:ALA76 4.4 26.7 1.0
CD A:GLU97 4.5 60.4 1.0
O A:HOH361 4.7 46.4 1.0
O3A A:APR208 4.8 45.1 1.0
O A:HOH358 4.9 34.1 1.0
CG A:GLU93 4.9 42.2 1.0
C5' A:APR208 5.0 50.9 1.0

Reference:

L.-W.Kang, S.B.Gabelli, J.E.Cunningham, S.F.O'handley, L.M.Amzel. Structure and Mechanism of Mt-Adprase, A Nudix Hydrolase From Mycobacterium Tuberculosis Structure V. 11 1015 2003.
ISSN: ISSN 0969-2126
PubMed: 12906832
DOI: 10.1016/S0969-2126(03)00154-0
Page generated: Sun Dec 13 18:59:13 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy